NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302323_100218704

Scaffold Ga0302323_100218704


Overview

Basic Information
Taxon OID3300031232 Open in IMG/M
Scaffold IDGa0302323_100218704 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1935
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000400Metagenome / Metatranscriptome1181Y
F050621Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0302323_1002187042F000400N/AMRDPETIDTELMEISAITDDVLKLERIITWCATHPDEVPFALHQFMGRASKPAAE
Ga0302323_1002187043F050621N/AMGWSTRIETVFSCLIALQFLLVVTHDLVDIPGWTHGSQVRSIIGSRKLWIATLVNAIFPGVAVAFAVYFWHQPKPKFVGQYWILYCAITLASAIGMWYVPYLFGTSEKKKHEYSAMYAGTRHVLPRRGDNPRPNLLHLCFHVLFVINFGLALAIR
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