NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302323_100327341

Scaffold Ga0302323_100327341


Overview

Basic Information
Taxon OID3300031232 Open in IMG/M
Scaffold IDGa0302323_100327341 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1598
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011014Metagenome / Metatranscriptome296Y
F060201Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0302323_1003273411F060201N/AAALLAIDARLRGTHADRLDTLLELGPRTRLDASELGTWIGAVEASTRRAGGGWAAPALLLGELSVEFPVERGALNAIFNNLLRNAQAAVAGRDDARVIVRVDRERDVTGRQVARLLVGDSATAELTLEVIEARESGRGLAIVRDLVRQWRGHLLGRPEAPPFHKQVGACFPL
Ga0302323_1003273412F011014N/AVTAARPRFVVCEDGTEYLDRFQRFLSDAFDFLAAGDFAAALAAAADSASGLLLDLDFRRTPPARLVDEAGPVSPGLDAGSSRRLAETQGILILRQLRARGVGLPALLFADLDDQEQARFLERTLAPLTVVSSRLGIVEVARLMRAALADTTLAGTT
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