NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302323_103425715

Scaffold Ga0302323_103425715


Overview

Basic Information
Taxon OID3300031232 Open in IMG/M
Scaffold IDGa0302323_103425715 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010657Metagenome / Metatranscriptome301Y
F026958Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0302323_1034257151F010657N/AYDQAAAPLKPGQSGRRGYPDYKAARGLRPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAMPGRRQTASQIAFYNNQRERQWGVSPRDRQAVLAAFVARPIVMLKAA
Ga0302323_1034257152F026958AGGCGGMADQAERVILEAEDMVTPVVAQANAGLDSFEKKAESAHGKVIRITDQTLSSIQRLIASL

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