NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302325_11505301

Scaffold Ga0302325_11505301


Overview

Basic Information
Taxon OID3300031234 Open in IMG/M
Scaffold IDGa0302325_11505301 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104286Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0302325_115053011F104286N/ATTGRLAIFSCRKGGKTLAPAQGSPVCAEPVSGYFTKTGTTEAPYAMAQVWSDLLAHTKKSFGGTDTHNVGGYLAIADPKNGWDFANTGCGPSLAAPNAPYGLAGMEALYAAATQYYHAYPDKALGATASDQACAEIDRMTDKGSDLDNYNTTSPSSGGQKGNGNYSDPSLPIIFGDNVTYTQDSVVAGTSQIALLPKSFEVSPGGNDTDFWSEVPECGVADLAATVSNGWTTHIASAEPCVDRDYVAGMRDNVAATISSGNFGVYGADSPKTLVGENGYYQPIRQWVV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.