NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302324_100000170

Scaffold Ga0302324_100000170


Overview

Basic Information
Taxon OID3300031236 Open in IMG/M
Scaffold IDGa0302324_100000170 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)171246
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)118 (83.10%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000978Metagenome / Metatranscriptome815Y
F002012Metagenome / Metatranscriptome604Y

Sequences

Protein IDFamilyRBSSequence
Ga0302324_100000170114F002012N/AMALSLAATLISGCAGATRAVLSLHAVARAQSAVLVSLWLLEESGRRNDIYNILWAVVFGFATLNILSLAARRFEPNRRRLTFGELMAVLVLLLSIFLLGWEMLSLLHIFPIKLRR
Ga0302324_100000170126F000978GAGGLENMYCLRCKREIESGHKSVAVYMFAQTVGIKPRQKSTAHRISFCPQCSVSLAMGLPPEGALNMAAWDMIRDLVSSDPSLNDAAWENLRGVVGLLSTGEEESQSATTGPSDAWVNFRRAG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.