Scaffold Ga0302324_100011190

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302324_100011190

Scaffold Ga0302324_100011190

Overview

Basic Information
Taxon OID	3300031236 Open in IMG/M
Scaffold ID	Ga0302324_100011190 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18464
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103153	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302324_1000111908	F103153	N/A	VKITITTPSVGASGATLFLLADDRISPVLGANFTAGAGGQIKEGFVNKQKRLVQASPLFRAAYLLSLPRFNLENRFGFTVQRTFQTTEYCISFIAYHPDNVPTQGEITLNEQSTTGLIARYLPNAVIESVECTKHTGAACDFQYTISGNGPWQTAP

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