Scaffold Ga0265325_10000025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265325_10000025

Scaffold Ga0265325_10000025

Overview

Basic Information
Taxon OID	3300031241 Open in IMG/M
Scaffold ID	Ga0265325_10000025 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	111160
Total Scaffold Genes	111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	93 (83.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location Name	USA: Seattle, Washington
Coordinates	Lat. (^o)	47.6516	Long. (^o)	-122.3045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002758	Metagenome / Metatranscriptome	532	Y
F022724	Metagenome / Metatranscriptome	213	Y
F049951	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265325_1000002529	F049951	AGGAG	MKSFIVACVIAVVLAVIGGVVLNSVPDSAEKTFSSSTGVRLGA
Ga0265325_1000002541	F022724	GGAGG	MPYASITALIFTLVAILHGWRIFKGWTVRLGPHSVSMTVSWVGLIVAALLAIWGFSLSG
Ga0265325_1000002556	F002758	N/A	MNRIKVAALVAFSALVALSAEAGQPDPKHGFSSFCDDEGDCATLKVAASKPSKARNSNADTSKSKPRRAVDANGNVMMVTVQTSYGFNITVHPAYAIKFQKLFALLKDRGYRVPAHITKCWAPRGTHVAGSNHYIGAACDIQTGWNRGPAFVYHMNDMVKKAGLYDGCAFHDCGHVEAVRGTHNKAPNLYASIEKFKSEQSTANYQP

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