NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307970_1023767

Scaffold Ga0307970_1023767


Overview

Basic Information
Taxon OID3300031243 Open in IMG/M
Scaffold IDGa0307970_1023767 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #712
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1481
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007407Metagenome351N
F049335Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0307970_10237672F049335N/AVTVHPRDRSVSIAASPVDEGAEPPDWSNTPAAMPDATRETRMLSMLVCVRAVLLNAPVKSPPLTLSKALAGKLVRLEQPCQVRRKSVPADVSIRGKLVRLVQLYQA
Ga0307970_10237674F007407AGGTGGMVTRDTRKAFLKLLDDTWPGVRSEFVAAMRQARAAVDMKALEAAIARGDVDAAFRALRFDAADLFKTDTAITAAMTAGG

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