NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1000525

Scaffold Ga0308395_1000525


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1000525 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29670
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (97.37%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F010840Metagenome / Metatranscriptome298Y
F012577Metagenome / Metatranscriptome279Y
F016404Metagenome / Metatranscriptome247N
F019420Metagenome / Metatranscriptome229Y
F043176Metagenome / Metatranscriptome156Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_100052511F005028AGGAGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTFIRYFLRYHIPALRESAAVGETYIDPDAAAEAHLGLCWRLDDAVLTVVSDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKVLERKPQNVVED
Ga0308395_100052512F076715AGGAMWWKIEEVPAQELEEWERALVRCENRAKRDLEARAAGVFVIFVREGETRPEYAPGDKAPEGAYLVGKWTLKKKGWMWYE
Ga0308395_100052519F002982GGAGGVKIQFERHPHAICAVLTEPGECDRIINVARPSDAFDVFALDINAAAFTPLDTLFSLPRVVLVEIERRAEGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWAPAR
Ga0308395_100052520F007976AGGAMPSSELAHFLNVALDIQAPPFSGIHVADGVILATDGVMLVAKKFDVVFMRGEGAISPKAAKVLEALAEATWIGSVAVVGNRVTATARSTRYEENVGEVAGEYCEVKLPEFYCPRVPIVRMLAVLTDESRGWVQIVENPRIKNVKEWSVKEFVALMSNPREGYELFRLKDIDDEHWYSVAQLRRGLRLFGAKAHLSVRRNRDGWLCFEDRWGQTFAITPFVKRN
Ga0308395_100052521F043176AGGAGGMQTYKIWQGERTFLPGDDAGKYTVVEIVAEELGWFEDVNPDGFSGTAYYVYQTSEGEVVINIVERKYSLGEPSRAVIYRFSNLDEAAQSEQRYALEELRLI
Ga0308395_100052522F006418AGGAGMPKRRSAPKPQPARELLVAEGEDFRILFDRESKDYAVEYRGQPVGWRASVSEARRLVEQLRYEDARRGE
Ga0308395_100052523F010840AGGAGGVNLPFSQPLDKVTYGALAAATVVILAWALREFAGIDLPAEVQSALVVIFGYVVSYYIPLSEVEAKAIAQTFYRK
Ga0308395_100052524F016404N/AMTVDELLTDESRAAVLRALLMIVLNESDPASARVAAARLFLSQFDEQPNADQNVLVIVDEAAFVKTV
Ga0308395_100052527F005631GGAGMRVSVSVDLNNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKERGR
Ga0308395_100052532F002970GGAGMSYSSVIDIIELLAGLAVQYNSAVVPVRRLTTQPNWSDAAQLPVRIIPTLGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWLARGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLVRAPSS
Ga0308395_100052533F005302AGGAGGMSHSGVLAGLYAGNFAVEISTDATTWTAVSNATVKVDDVELNRPSGEAYVGGSSDYATITVGKREPVELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSIRQYTLAASDPTNLNPAS
Ga0308395_100052534F004791AGGAGGMTKPAEIYDIDTIRVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKTVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308395_100052538F012577AGGAGGMLVAIAEPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVFTTTKWKPVSSGFMPNSGYNSRPDLWEYEFIPGNLFISIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTTTGLATGVWVAPVTAIPQPNTYTLTLGTFSSINNEGVITASTCYGWVVGVRASGNETTVGATSVAFLARINDPGAGGINAELLSTALIARGGCCDIYLPSQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPRPVIDLRSDSTLVWRFPEKTRVVDISKAPSRVFAQYRGYWTDHLTATTTIQSLESRRRLARRVAGVGEYGSKTTADARRDEAAIALDRQIAPLTVELDNSRY
Ga0308395_10005254F019420AGGGGGMAIYRDVIFWSGATDGDCEATVVRARLLGMTIDLGDDDERPDKMTAFYEADGGGIIVYEVECWEADGRMTARWRRVASLEEMRRAYLERLEL
Ga0308395_10005255F006252GAGMKSFDEQAAFGLPYERLIAQTAALLLYPQRLDLTLVRLDAYAPLDYLLLDGDCPIAALEVKRRSVRSDTYPTTIIPQSVVDAARRLTIPVFAAILFTDGLAVFDVLRTPSTARWLRTRRGRLRKHREYDISERLVRIEEVHQLPRRGA
Ga0308395_10005259F008499GGAMKSRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGNDPGYAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
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