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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031245 Open in IMG/M |
| Scaffold ID | Ga0308395_1002614 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10123 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus marinus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028964 | Metagenome / Metatranscriptome | 190 | N |
| F029920 | Metagenome | 187 | Y |
| F059420 | Metagenome | 134 | Y |
| F061873 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308395_100261410 | F061873 | AGGAGG | MNEKMNETMTLDDLIRRGVEIREKRIAEERARITAFYEKLARESAEREREIRALLPPPLNELSRVDVGVRHAHIYITEPFPGKGKVRIYASKEDDQWHLLEFAAYNPDGYYLKFQTLEEALAFAAGALEI |
| Ga0308395_100261413 | F029920 | GAG | MISAHALERAFQTERPLKGFVVPGLAFSYQPRESLTIGRADRPPDDEDIALVIALAREAFIIIACEPQRKVVASNGVTWYLARWPLQRESVADHLPLEKGDTDEPQPLSPKPSVLRIF |
| Ga0308395_10026142 | F059420 | GGAGG | MEIELFRGTSTLTTLHYRNVPGQYSWVLRDFQGDLMDEVEALTRDALGGRTLLIGQQGRARRIVIVLDVQGTSMSNLHAAIRELETHTRWRSNEPPVLVLRVRAQATDPWSLQGVILEQMSAQFEDDQYRATVTLRFACRSVYWREFINTVFSSNNTLTENAFVVNLSTMTFAPITGIADAITNIDYRPASNEWIIFTTTQVWRAPATGGAAALIGSVTGSTGLRGCVAHDGNILAVALGANQLVRFTYPSSAPTVLGSFNGAPFRVRRFGDQYVSVGEFSQYQTTTGLAGMVITNVNGVITNTFSPFPSSVIFPGGGRIRDVLLRDNIGVAIAYRAASPSQSWVVVWSSQVAPYYVAEGASTWGPLEIDQSSATDDVTICADSWIHAGRTFNTLCRLRNLGGIVPYAYPTASVGGVQDGCAVERFTFSTSEPRKAFRLGDDGTAMPLFTASVNSLAVRRVGNLMCIGYATAANVWTPLTVDVSTIANTGATAEIVPRLAGLALPVFSCYSKVDTEILGEVIDPQVQAANYEPKYHGGGTVTPLPGTRYERMFRGSMNEAINRYWFAVGGNVVSAITLNRYKHDWR |
| Ga0308395_10026143 | F028964 | AGG | MIGAEVILALTSLRSPGTRTGAIALSGSFERRAMEVAECELEISVRAPSYELSAYGDVLLVMLPDRREYYFVTAIERRNTYYVFRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPDNVPPSVNVSTSFAWASRLEAAQEITRLAHAKGFPLVWWFECGRWCGVKDASGNYGVGPSIALVFAHGLPRNGLFRPRWASSIKYEAWVYDRSQPTAGVALGYGHGRDRDVTRARAARGLFNGWTYWESRIDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGDNQRCAGIAHVVSERYVVTGGQVSSAEVGVVQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |