NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1007044

Scaffold Ga0308395_1007044


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1007044 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4886
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042064Metagenome159Y
F042114Metagenome / Metatranscriptome158Y
F043791Metagenome / Metatranscriptome155N
F046762Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10070442F046762N/AMTRSRFDFRIKFDANREVFVLMVEPEVTSLDGRGVNPKAYEAHAICMSPNLFIVRIPDNEIPSDFVAVGDNNLPRGVQLIELRFVGSKVCFTFQFSDEALLNATPTVYRAWMQSLLQAGVSLDAFARE
Ga0308395_10070444F042064AGCAGMTLAVILLSLSDVRLDETRRTSLASLSDAASQAMFASLSHGLLGFPTTILLKLMYILRALYITYSGLDKRQECGIIRSMNSIVRDYLAYAFANTSRLSKLLNHESLTPIVAMWQEDNYLVIATCDGYRQHEFRLLMFRDDGNSPALLHGRVLAFNPAAIAAAARALNEQLSENDLLHIDYDDDQTTVSLSAPGITIGLKATESQHKDHIRRFAATFIETERPDTIKINAKELLAALPKPRRNNERMYMLVHFLDNTWQAGMQPELKNWQPTEHNGVFSADDVQGAPDCKLNVQMLREALEVAERYHPFVECTIALTKRNEAVWVHAVVGKVLDFRAYIMPIVKIQR
Ga0308395_10070446F042114N/AMDEITRVATLNEAFKAVQRHTPFLYQHASWRVLYQPLDSQRARLFIINPNRYPQPNEYANAMAEMAIFAACAQPKRFEHNGWKCLQFDLERKTLQ
Ga0308395_10070448F043791AGGAGMIENVLVAGLATVYFAFVFTAKRGPFDFFAKIRAAARRIPVLGYHLSCPTCLSLSSGALLFALTFTPLAFVVHIMAVAGIVLALHGMAGYWHSKDDEPYSSV
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