NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1007953

Scaffold Ga0308395_1007953


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1007953 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4477
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037460Metagenome / Metatranscriptome168N
F052924Metagenome142N
F052925Metagenome142Y
F069505Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10079532F052924GAGGMAKAQYKTEEERELKQLSIGLSNLASEIRDFTRWIRTAPDPAGKVQQYRARLDRIFDRIGQLRETDPNRVAAMERRIQAARQDLENALQQAARGVEEPKSFFRRLYDGITRVTITVLQTLGGVVGWIFRRRGGP
Ga0308395_10079533F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDDAVQAFRSAPELDDLPQPGADIFAQVYSIFENEKSRLYYSRVFGDSLPGSSEDEKVVHAFLSFLEALATALERGVGG
Ga0308395_10079536F052925AGGAGMKRDCFYYWEELRKIVEGFTPYDEDIRRLTAAERRQARTDAAWDAAWTAAAKGTADWDKRHAIASALLWLEEKGLYGGGCAFPGAGTKRLRFFRSLGKGRRKASDGPAWTEAIGWAARKHGWCEWDLTGDGLGVHFEPHLGETEALKEFTLPLREVLFLDGDESADAVEAWVGACKHAIQEFGKPRPYGVREQTKDLFLAAVQEYTAAKEALSRARALEAVPRPAAEEAEDAGNS
Ga0308395_10079537F037460AGGAGGMPEIADGLAFFDAAVRLLRKGWPPMPPLITGYSNYIRYGSVYWHCENGPLVLRWAEKVRQRRDWFAYAEPLLAYFFPGHPFRRPEWRPPEGITEGENPSNSVGWPAKALVLEWKRAARKRQPLWHPAHYVVYYRFFDNRVPEWNAFYLFLTVFLRRELEQLQAARPAEWLLLDGPAPIDSLSPAPQFHLAPGLQASWQDWLKATKPVARRYHFKRHKCLLA
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