 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031245 Open in IMG/M |
| Scaffold ID | Ga0308395_1008059 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4437 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007404 | Metagenome / Metatranscriptome | 351 | Y |
| F014738 | Metagenome / Metatranscriptome | 260 | Y |
| F037517 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308395_10080591 | F037517 | GGAGG | MRVRQIGTLVFDADTNIVVDANNQDAPGIGFRVDSLFDPQPFAVEIAFRRNTRQQALDAVNTLARELHSYAQRRQDGRLAVAGGVLVVAEDATGGASLRSFLRDGSVTLLSVEATATGVLARVRVTGTLIHPFLNYVFTPNSILTLLPYERRAVTLSGLSDAYLYKHRFDCFIYNMTGLYNALLAVEELESATGTSRIQAVNPATASGGIVLQNWNAGWQTLTRANFSSATSGTITYTVGTALPHDVYRLFIEIFCPTTPAANAHYLVSWDGQPQIAETISGDRSWYTPALFVRGDASITLTLEIQNVPTGTLVMPLVLIPTDGVSVWSVITPPTLQSFNIRDLQSTLSRPFETNPSGTVYGAPGFVSSRHIAVFNGVMAPTITNASATLTIRSHRIEPAAFA |
| Ga0308395_10080594 | F007404 | GGAGG | VDIVEIFQLLAAGHAGLTAADYLWNAVFGAIGAATAYLADTNGEVFLPRYDAEQHSIELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPLLIDKITAFVERRRK |
| Ga0308395_10080595 | F014738 | GGAGG | MKLEVLMLVSAFALAFVHPDATQVAATAVVLLLVTRIERGRRARKKRSAPASC |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |