NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1008430

Scaffold Ga0308395_1008430


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1008430 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4290
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10084301F002978AGGMSSVRDWRVTVVPWADRRLWFVQARRGRRVVWGIVYDADDPDSVALARRAIATLRSAGADCSALPHPLPGIAPPGA
Ga0308395_10084302F000642GGAGMQEMSIALALCAVAAAVWYMRRREASGRVHGWLVLYDDLGGWRALPAVYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVAGLQALVAQILALVGDK
Ga0308395_10084303F001381GAGMQYVIATLYVLVWLALAAAAALWLPVWALPVALVQLAVAYVMVRSWLTAAAGGDDGA
Ga0308395_10084304F000855AGGAGMDWLEDFFSKVVSWFDERAASIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYASVVQQALLAQLTIVTVGLAFRAWLVIRRVVLVS
Ga0308395_10084306F066811GGAGGMQFNNPPAFTAPSMTDILNAATSIFNPFVGVLALAIGVTLGTRMLGRIVNLF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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