NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1008565

Scaffold Ga0308395_1008565


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1008565 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4240
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004170Metagenome / Metatranscriptome450Y
F015185Metagenome / Metatranscriptome256Y
F017835Metagenome / Metatranscriptome238Y
F069745Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10085652F004170GGAGGMNDPSLFASPLVRQAARNLRTVEWLSENNTWSSDLSYRWIFWRTRRMMARTPDEAAAWLPALAFAVSRERNTFVLPEFAWQPLPEPLPREALPWRDILIRNWEQRPVPTEEEKSIRLFALVRLDRRAERLPEWLAEARRAMDLEPKNRHPRLAALAGWRPRPGDGQPHRGKRGAAQAWVRFWERRYRTPGSELEGLIAATALLHLAEAGWLPSGPSPERLRAEFRQRVQQWPVSYYERSVLPMLLASVPADASAPERLRQDITDWLELIRENVHWEKREAVWDMLAAWQREGILERCGISLLPDLARTLEWEQDDDVLRAMARYIPGALEVSAYPKAARAVVARWEALSRNDDWRIRRVAWVGRWNLMRAGVLTAEEQGRFGADDVEAIGAEDDWDVLLALVQIQPPGTFPLATWAGRLSDQDDRRRLAAHLAIHGWLVNIASGSEASSEQRVASSDLPLAARHSLLATGRRQVRQVLRRAGQEGRDAGTVAPFVNLPPEVLPNFRRLHEIETALAAGQMPPPPDAAAENRVTPRAVPARLPESHPRTGPPGITGQTTGRTAGSEPPARHPFPEVIRHE
Ga0308395_10085653F015185GGAGGMSDPSLFASPLVRQAARNLRTVEWLSENNTWRFAWFCRRDFWRTRRMMAVTPDEAAAWLPALAFAVSCEKDDDVLAELARQPLPEPLPTEARPWRAALIRSWERQRAATSWGETIRLAALVRLDRRAERLPEWLVEARRAMDLEPKNRHPRLAALAGWRPRPGDGQPHRGKRGVAQAWVRFWEEAYRTPNSELDGLLAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQWPMRSWEDAEILRMLLVSVPADASAPERRRQDIMAWLELTGKDVDWGKREAVWDMLAAWQRESVLERSGRGRLPEPPRLLPDLVRTLEWEQDMDVLQAMAGYVPEAAEVSAYPEAARAVVARWEALSRNDDSQIR
Ga0308395_10085654F069745AGGVARWNFLRAGAVTAEEQSRFDADDVEAIGSEDDRDVLLALAQITPPGTFPLAIWTRRLSDQDDRCRLVARLAIHGWLVDMAGGGQSRQVRQVLRRAGQEGADNRPVAPFVNLPPDVLPDFRRLHEIETALAAGQMPSPDAGAGNRAIPRTVPARLPESYPRTGPPGITDRTTGRTAGPEPPARHPFPEVIRHE
Ga0308395_10085655F017835GGAGGMSDPSLFASPLARQAARNLHTVEWLSENDTWRPGWFCRWYFWRTRRMMARTPDEAAAWLPALAFAVSYEKDDDVLFELVRWPLPEPLPPEAI
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