NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1008680

Scaffold Ga0308395_1008680


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1008680 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4201
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011548Metagenome / Metatranscriptome289Y
F040649Metagenome / Metatranscriptome161Y
F069555Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10086803F040649AGGAGGMRKLNIDHPAQLLAELRAITDACDPNDYAPLEYDIDGAYLRLTDGSPATGDWLLAIKTVELADDLVQYAEGSGALRRSFRLVYLAPLETYFLGEYRWRDANGMCIRACWRRIPKTYNAQLDALRKNRQGGRGDA
Ga0308395_10086804F069555AGGGGGMRKAIKDQAVKLAAAIREAGKREIEYRIGSFGLELADGSRPPADMLQRIQQLSIKTETVCQWAEANGARRDCKLVYSARDGAYYLGEYRWLDNNGLRYDVVYYQIPKYLEPKIQSLQKQAMAQELGVFSAASASGCDSGGGSCSPCASAASFTEGCDA
Ga0308395_10086807F011548GGAGGMVVISGVELVQSDNLLWAAQRGSERLRLIADAGVQVRRVGERVYVAHALPMPATRTVRLMPETKYRTLYHLRIDDSCRFGVIPADAQVWSDSIGGIYASGYAAAQMSIINPPAFIGIVRKHKLIYQLHYIALLPSGEVREMGTKHNVLLLAKTGEPLALQLARLLGGG
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