NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1008716

Scaffold Ga0308395_1008716


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1008716 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4187
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F031016Metagenome / Metatranscriptome183Y
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10087166F031016GGAGGMATIRIWSGSRRVVCGEDYEFVKYEEFEGETLGACWEEENSRGTQTTFYRTPDGRIVVHVIRWSCWENEATYAYVHVFPSLEGVNGAAAMFWRELRKAGIIPPLTVGLDE
Ga0308395_10087167F002982GGAGGVKIQFERHPHAICVVLTDAGECDRIITVARPSDAFDALALDIHTAALKPLDALFALPRVVCVEIERREGGWRVEVAYWSKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308395_10087168F087842AGGAGGMITIWGGYIAAGDARVYLITFDGERIGGVDERNAQRTFYATADGRVVVHEVRIGKRRCGRTYDQALVYVFSDLAQACMHLTVNPQHIDPTRGEVTLPRVDAPTLTLDEWARGAGTY
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