NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308395_1011492

Scaffold Ga0308395_1011492


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1011492 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3423
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F059548Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10114921F059548AGGAGMPTRREDRLWSVVHQRSSHLRALLDSMDDIDVVITYELDYYPYAVIELVRVWEDGPP
Ga0308395_10114922F002795GGAGGMPVTSGLVLRGMVAAYREFTSRKNGRVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVEFPARLQFLRDGSGRPTIRLYVDEGVR
Ga0308395_10114924F002229GGAGGMVTLLTLDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVVCNRRVTATPAAIGWCWVADGLGARGYWSPALACIPGEVRALCGGCAEDEDEED
Ga0308395_10114926F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308395_10114927F002978GAGGVSVHDWRVTLKPWADRRLWFIQARCGGRVVWGVVYDADDPDSVSLARRAVATLRAAGADCSALPAVLPGAPPGAPGA
Ga0308395_10114928F000642GAGGVQEISIALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLSAVYGDAGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHCALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQSLVAQILALVGER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.