NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1012122

Scaffold Ga0308395_1012122


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1012122 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3282
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10121221F002978AGGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVSLARRAIATLRSAGADCSALPAVLPGSPGAPGA
Ga0308395_10121222F000642GAGGVQEISIALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPSVRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0308395_10121223F001381GAGMQYVVATLYVFVWLALAAAAALVLPRWALPAALVQLAVAYVMLRAFWLTVARDDDGA
Ga0308395_10121224F000855GAGGMDWLEDFWSKIVSWFDELSAGVHNGVIGWVNSLVEIWNGWMDALLHPARAMPSVPALRWIVDWLGGIVDYTRLMYMLVDYVAYASIVRQALLAQLAIVAVGLGFRAWLVIRRIVLVS
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