NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1015262

Scaffold Ga0308395_1015262


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1015262 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2755
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10152622F004024AGGAMRSERDYLRQPSSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLAIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYMRRRDERRSDR
Ga0308395_10152623F002978AGGVSNLRDWRVTVVPWADRRLWFIQARRGRRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPASLPGTPPGAPSAPGA
Ga0308395_10152624F000642GGTGGMQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDSGIVADGVTYPAALPALRAGRELVWVARCESAALIEHQALERAREAAALASLWRGGGQWLDLMRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308395_10152625F001381GAGMQYVIATLYVLVWLALAALAALVLPIWALPAALVQLAAAYVMVRAWLSASDGA
Ga0308395_10152626F000855GAGGMDWLEDAISKIVGWLDQISAAVHNAIIGWINGLIDIWNGWMDALLHPAQAMPSSPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
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Institute for Fundamental Biomedical Research
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