NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1026501

Scaffold Ga0308395_1026501


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1026501 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1793
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F059548Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10265013F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGGVTWMRLISVPGWWTVLFGKQLIVTLAPAGWCWVMDGLGNRGYWSAALSAVVADVCAMYGGCVEED
Ga0308395_10265014F008135AGGAGGMSIVDDPRTERVLTEAGADIARVLDSRQRHAVVLAVDVVWYIVAALPPDEHMTCRDVVRLLRRFRQGFREEDDGDE
Ga0308395_10265015F002795AGGAGGMATNDGLVLRGMIAAYREFVSRKDGKTYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYSRGEMVSFPARLQFARDGSGRPVIRLYVDEGVR
Ga0308395_10265016F059548AGGGGGMPTRREDALWSVVHQRSAHLRALLDGLDDVDISIAYE
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