Basic Information | |
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Taxon OID | 3300031251 Open in IMG/M |
Scaffold ID | Ga0265327_10452574 Open in IMG/M |
Source Dataset Name | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 555 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Seattle, Washington | |||||||
Coordinates | Lat. (o) | 47.6516 | Long. (o) | -122.3045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F038877 | Metagenome / Metatranscriptome | 165 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265327_104525742 | F038877 | N/A | AAAGQLSVFGSEPGETSYNPLWEELMVTWKAGVKPVLLVKDDQIDALAKKGELTVKDAHVVLDAPITSVAK |
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