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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031255 Open in IMG/M |
| Scaffold ID | Ga0315554_1012204 Open in IMG/M |
| Source Dataset Name | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-70 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4131 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium CG2_30_46_19 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.759 | Long. (o) | -70.847 | Alt. (m) | Depth (m) | .7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050899 | Metagenome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315554_10122042 | F050899 | AGGGGG | MKGNRLLLGIVVVLLMVTSVLPGCNEGQPTELVIPSSLDTIQVFNKTANAGPFIYTYPFFQGGWSAEDIDPFDMPEGASEEQFIEGFSAGIPESLYIKRDGKQAGYRDYKLVLWIIVLKYEDTESAERSFVNIGEAQELQDSTYKGIVLKNGTYTLPFWWEELNVWDELNQPCYLIHSGCFVIYFFGRDDVAKDMLDRIIAAFGVKE |
| Ga0315554_10122043 | F050899 | N/A | MIIALMFTLVLPGCNNELPPVEADKLVIPSSMSPYEVFGKIASAGPQIKTWPFFEKGWSAKYMDPYSMPPGASEEQFRDAFGAGLPEFYYIKRDGKRAGYGLFTLVSCIVILRYEDTESAERSFINISETQELQDSTYGGIALKSAIHSLPWWEDTKMWDESAVPYYLIQSNCFIIYLYGREDAANDMLDRIIVAFGVSK |
| Ga0315554_10122045 | F050899 | AGGAGG | MGYKILMPLVVIALMLTSVLPGCNNKEQQVEADKLVIPSSISPYEIFGKIASTDQQIKTWPFWQGVWGAENIDPYGMPEGASEEQFIIAFSARLAEAFYTKRDGKRAGYGLFKPVLEIIILKYEDTESAKRSFLNISETQELQDSTYGGIALKNGNYTLTWWEEEPKDWDESTMPCYLIHSNCFVIYFFGREDVAKDMLDRIIVTFGVEATSNQTQAGNTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |