NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307983_1030518

Scaffold Ga0307983_1030518


Overview

Basic Information
Taxon OID3300031269 Open in IMG/M
Scaffold IDGa0307983_1030518 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #991
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1114
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007738Metagenome345Y
F014583Metagenome261N
F033324Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0307983_10305182F007738GAGGMSGAAIAAEVALAYAEAGRDAGDGVGAVSVTISRPGAPTGPEWNPTPGTPVVHTFTAKPAAKAYTQRTGLALGEGELVYSLVNHGVTIAPSTSDVLTIDGVNWPVQEVIPMDSAGFVISWMVKMAK
Ga0307983_10305183F033324N/AMTDTAKRMMDDAKTDALFAAAHAALPGVKRQAELMAKMRRLHYDASIAQGFTPDAALILCMDCLAQK
Ga0307983_10305185F014583N/AMTTRDTRKAFLKLLDDTWPGVQSEFVAAMRQARAGVDMKALEAAIARGDVDAAFRALRFDAADMF
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