NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307969_1019902

Scaffold Ga0307969_1019902


Overview

Basic Information
Taxon OID3300031334 Open in IMG/M
Scaffold IDGa0307969_1019902 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #710
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1722
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042745Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0307969_10199022F042745N/AKSKKLKDDTRSIYNISCYSKLTFKSFNLDHYIYMSNNYLYYTALINNDGSVKTTYESEVEPDFIFQEDRKVPLLDKPEEYEVAVSSCMMDLKSIPIFIPTIKYNTSPTDIQKLETIYEVTLEYDGYNATVPIYFEPQDQTITQPSFINGYANYKSGYYNLYNYEFFFTMVNEAIRTAFNELINVITTYQGTLPTGFSGLATNGLYEIPYFIFDKESSLIFLNSPKKTFSETNTNFISIYLNKPLYRLFNSLPFILQNKSLLTLDGTTQTTTNQTLFKLNLSNFKQANEVEIFPHLNDNNSGSTKTTHMLIYQDYETLSTWSPVESIVIISPNFPIKSNEVSADVEYVEGSPTVVGEVRHENELLEISTNSPVPVIVYEPKQYRFMSMKQSDSGLREIIFKIYYRFKNNGDLIQVKSNIGGSFSLKLMFRKIK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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