NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307951_1018159

Scaffold Ga0307951_1018159


Overview

Basic Information
Taxon OID3300031335 Open in IMG/M
Scaffold IDGa0307951_1018159 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #374
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3938
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012963Metagenome / Metatranscriptome275Y
F035202Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0307951_10181591F012963N/AAIEMETGLSDGRSQRLYSGISTISSTVNYRGVYANTSVAAQLDYFCQFTLLLSLNSRGTNTWQVSV
Ga0307951_10181597F035202AGGAMSIKIISGHSIFNENAVVMSKKFGWALETTFDPQPNDLYIVLGAHELAYQLLEVQIRKNNSFGFIILNSEQIHSQFMKNKYYISLMKKNIVFDYNTLTAQYLKETHNIKVLSYFFFEFMKFEVERKDRPYDVCFIGSRTPKREKIIQELQEKHQNLNFYIDFD
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