NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308146_1087271

Scaffold Ga0308146_1087271


Overview

Basic Information
Taxon OID3300031340 Open in IMG/M
Scaffold IDGa0308146_1087271 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_322_32.3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)86
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021397Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0308146_10872711F021397AGAAGMNIDAKFFSAIIFLLVQTVGAIWWASGLTSEVERLAGIQGRAIPALEAEAKQCGIEIHNLKKLTGDQEKVAESVKNLDVMLYRLQTIESMLDKILATK
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