NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265316_10029272

Scaffold Ga0265316_10029272


Overview

Basic Information
Taxon OID3300031344 Open in IMG/M
Scaffold IDGa0265316_10029272 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4530
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F011110Metagenome / Metatranscriptome295Y
F078487Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0265316_100292722F078487N/AMAAWNQLSGLANAALLAAFGQPVSYQPGAGDPFTVTGILDKRTDEERHPDTVYARLFVNLSDFSVPPDHGDEVSVDGALYTVFEVLNDPAGGCWLSIREKI
Ga0265316_100292725F011110AGGAGMSKVWLMPPWGLGEPMEVDATPEILTPRLVAGWSQCEPPANTQEVTTHVND
Ga0265316_100292728F001564N/ALCPDAPEDDAQRCDHCPLDRLDVAQTTEKGLVLRRALDLMGALKLGVRISLDDIRADELAAMLIIAEERDLLDREKSPSWRGRDPI
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