NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265316_10124172

Scaffold Ga0265316_10124172


Overview

Basic Information
Taxon OID3300031344 Open in IMG/M
Scaffold IDGa0265316_10124172 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1948
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006683Metagenome / Metatranscriptome367Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265316_101241722F006683GGAGGMNKPDRADVRQVDLNVNGITFESVRLRRRCGLADFDVLIDDPNLGRFAPTPAFPNLELRDEDSDWRRVSLDELKKILADDGELAELAEEPQASETAERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQKKFASNLFMVLNVSKARACLQRAGFQAKFDSETVLFDGCNGQAVQLIQGKYRLPKAKS
Ga0265316_101241725F087101GGAGGMADRKRISASGDMPLRVTGEAVMYLSSLSQFHGIPDSALIHLAERRTRMYVPARWVAIALILSNRIPIPVPTLHGQVQGNSSEDPALAKLEVIIGGRVPR
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