Scaffold Ga0307444_1008253

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307444_1008253

Scaffold Ga0307444_1008253

Overview

Basic Information
Taxon OID	3300031360 Open in IMG/M
Scaffold ID	Ga0307444_1008253 Open in IMG/M
Source Dataset Name	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3947
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.722	Long. (^o)	-70.891	Alt. (m)		Depth (m)	.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028324	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307444_10082535	F028324	AGGAGG	MTHSSLKVEVQGSYILVAMRGTCLRAKYRKQEAPWLATDEYGPDDPEATISFSEFRALAWAAANDAARQLGWISGYDELHKTVKLANAT

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