NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307954_1064228

Scaffold Ga0307954_1064228


Overview

Basic Information
Taxon OID3300031391 Open in IMG/M
Scaffold IDGa0307954_1064228 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #437
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1233
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004446Metagenome437Y
F027419Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0307954_10642281F027419GAGGMTLKDWQARWGDHIPAQALAELTDILSPVMPSLAPTARHSEAAGAAQIRLAAGRAGVPLFRNNSGAMTD
Ga0307954_10642282F004446GGAGMKTITPTSTPTTFFLPADDLRAASQCISATSYYLGGVFVEADKLVALDGHQMLTIELPDCCHVGTECFTQGMDAPRMPGAGFILSCDAADKAFKAKASGGALWVYGDIETGILQFVINHGEGGEMSRVGVLEFTRIDGTYPEWRRVVAKGDGGTNSVCYDPAVLGKLIKAADVIEKGKGIRLTGGEGEGDPIRVDFVASPRLRGTLMGMRWTGA
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