NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307963_1004543

Scaffold Ga0307963_1004543


Overview

Basic Information
Taxon OID3300031394 Open in IMG/M
Scaffold IDGa0307963_1004543 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #594
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11002
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F023256Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0307963_10045431F023256AGGAMLLPSWNKNMTSNSYASLCCKYPRLCKFLGTIPSNQLQYAKVPFWNNIQIPLFKHSSELQVIAIWNTKGRVCLNAHNKDWLKELAKEIPEAKWKIQNIHNHPYQTALGSGQHSGLNKIHKLANDHPQAPEGPNKTSALISTDQPHNYCNIDEAPQNSSSQNLTRKVKDWRDCTYTDGSLQKN
Ga0307963_10045436F000607GAGMELGGKLLYSLRIKTQFLERLQSVSVVDGAAHTQKDDVESNGGSLENVAKVFVLFFCGVQLVLRSGVLTILDLNEVDVTPSFAEVFRSMLSEVGGSTGGWRCC
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