NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307963_1109751

Scaffold Ga0307963_1109751


Overview

Basic Information
Taxon OID3300031394 Open in IMG/M
Scaffold IDGa0307963_1109751 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #594
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)824
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003574Metagenome478Y

Sequences

Protein IDFamilyRBSSequence
Ga0307963_11097511F003574N/ASVSIAASPVADGADPPDWPNTRVPADMPDATSDTRMLSMLVCVRAVFVNALRKFPPLTLSKALAGKLVRLLQSSQARLKSVPEDVSIRGKLVRLKQLYQVWLKLVPEDVSIKGKLVRPEQPRQARKKSVPEDVSIREKLVRPVQFCHALANLVPADVSMSGKLVRLEQLYQAKKKSVPEDVSIRGKDVRLEQPIQAKLKSVPADVSISGKEVSSDQSRQ
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Institute for Fundamental Biomedical Research
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