NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307979_1070928

Scaffold Ga0307979_1070928


Overview

Basic Information
Taxon OID3300031398 Open in IMG/M
Scaffold IDGa0307979_1070928 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004689Metagenome428Y
F004915Metagenome418N

Sequences

Protein IDFamilyRBSSequence
Ga0307979_10709281F004689N/AMKTLIYILLFSPLISLGQGISLNISQDARLALVGDERGNESFTTNVNLGFELRGLQKGNSYFLMKPEIEYADLQGGELYRMTVNFGYTFNKWIKNVDFTATVGGGMLSRHELGGLHAQANLQTTWYFT
Ga0307979_10709282F004915N/ATHEQWKDQAERFSSIADAVNSLTFPKKDVNEMPATIEMTVVQPLSQGFKGRVIYTQQFEKIIQTEKEILDEDGMSTGEYETIETAIIKKHVVVDYYETIPRDMANVMFGQFLGSVPDTITDYLDIQDWCIEQAFIQQVVSRDTFGGLQASDYTLTK

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