Scaffold Ga0307945_1045461

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307945_1045461

Scaffold Ga0307945_1045461

Overview

Basic Information
Taxon OID	3300031404 Open in IMG/M
Scaffold ID	Ga0307945_1045461 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #228
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1921
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.4561	Long. (^o)	78.1899	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307945_10454613	F001894	N/A	IHYIYQDRPNKQRANKMAKRKLGRIGYELDERNTDKDVLTAKRGNNVHINYSGTNIRNPRDIISDIALATGVQRINPQFKERRQKTRNIMRQYGDDNSYSLGGHSLGGSIAMNTVGQSKSIRDRVKKVDVFNPGYTLPFHQSIKVDKPVKKELDKKVTVHRTKGDLVSAYANKDTAFGAVAEYTHKDNNADLSDKHSLDTFIDKDL

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