NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0170820_13767562

Scaffold Ga0170820_13767562


Overview

Basic Information
Taxon OID3300031446 Open in IMG/M
Scaffold IDGa0170820_13767562 Open in IMG/M
Source Dataset NameFir Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016091Metagenome / Metatranscriptome250Y
F082855Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0170820_137675621F016091N/ATSIAWAHQHNSNLRPRPKQLFERGELGLIGLVLGISVIWDLLQSQYMPQTRALGAVLLAVSGTMAGAVWIETYCRESNGVRLNPERAWRDSRNLAFLVFSMAAVIEILLDRFAKVAAS
Ga0170820_137675622F082855AGGTGGMSAPAPALAKAPQRIVTVRLADAALAVSCLSLGFGLLLVFFPVSFPRIIQNIWLHGHLTVVMMVITLSIDACLYVRIAYRLSANPTVLAALCLGSLPIIVAVGLSFCLQGAVDYTLSGDLPNLQARIGEEILAHTYLGLVAGIFLPFLALRLLQQLKAAKSNRETESPSRKTAPATS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.