 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000003 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 572686 |
| Total Scaffold Genes | 698 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 418 (59.89%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F006206 | Metagenome | 378 | Y |
| F025887 | Metagenome | 199 | Y |
| F028978 | Metagenome | 189 | Y |
| F037508 | Metagenome | 167 | Y |
| F059497 | Metagenome | 133 | Y |
| F069514 | Metagenome | 123 | Y |
| F070712 | Metagenome | 122 | Y |
| F084912 | Metagenome | 111 | N |
| F094626 | Metagenome | 105 | Y |
| F098340 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100000342 | F025887 | N/A | MSDDSFDFKSFTVDVILNSLEKIFRSFALIDTKVTDMTFIDESLMSELCECFDIQSISLSKSKSIRSYDETSD |
| Ga0272435_100000355 | F084912 | N/A | MTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSSNFNSESDSKN |
| Ga0272435_100000357 | F059497 | GAG | MSIKDIDREIVYNTQCKLNVLDVAFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVDMLSSHRSYDHKIELTNDVTSSRCRAY |
| Ga0272435_100000367 | F098340 | N/A | MIKVVAYQTLVKNKKIKIFFLIISEINKALSLVEDFAKLNEMISVMSLNELKKKLSIVYHDFLNVFDKEKITQLSLH |
| Ga0272435_100000369 | F094626 | GAG | MMKQVNKHRKEVNYKIESKMFLNERNIVTARSFKKLNDKMLDSFINLNLVDSLYKLKLSESMHVHDVFYSDLLHSVVNDFLSDQKNEFSDSIVINDENE |
| Ga0272435_100000370 | F069514 | GAG | MIKFVDNNALFSVIFSISFFLNKDFHSRMSFEFDVIEYESFHERLQMTKVKNISEHMNKTLKFACESLVKT |
| Ga0272435_100000371 | F070712 | GAG | MNDIKEKKFLIKVRKQVIFAEKRDSLNFYRKIEVTTLVDHSKLCDVILTNVKDIDLQAEICFICHKSDHTSRECSDRSRINALKNNEFDQFTLNFEFDSDSKN |
| Ga0272435_100000372 | F006206 | GAG | LCSQIEVLLKENYFKKLFLINASLISQSNSFSLRSLIDSDFIIYTLIHDKLVDKVCQKLEIQFILLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHKAILSKL |
| Ga0272435_100000390 | F069514 | GAG | MIEFVDNNALFSVIFSISFFLNKDFHSRMSFELDVSEYESFHERLQMTKVENISEHMNKTLKFARESLVKT |
| Ga0272435_100000391 | F028978 | N/A | MKIADLEEKENDESIYRLILEVNRINENCILLREVVLKDEAQYKDTKLKDCRVQNEILYQSDFL |
| Ga0272435_100000396 | F001253 | GAG | VTFIKDVMKDVLISSTTSSSNDLFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFINELIAQNVCDHLQIESLSLIKLKSIREFDDHYVKKLITHAIYSNLTVQDHMKHFTSMLIT |
| Ga0272435_100000397 | F037508 | N/A | VIFRLEDDADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIQKCCCKYIALKQLNKSFSSFYSEFTKIFSFLNYDDITLMNDIQNKINNHLQNALLICLIKFSLLDKLKIFLQDVNNKQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |