NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000006

Scaffold Ga0272435_1000006


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000006 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)383765
Total Scaffold Genes472 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)291 (61.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F013598Metagenome269Y
F021452Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000006451F021452N/AVTESDILVFCFISISDNLFDFKSFTVDIILSSLEKIFRFLALINTEVIDITFINEFLMSKLCECFDIQLISLSKSKLIQSYDEISDQKSITHALYTSIMIQEHKNEMMSLLITYLDQHKIIIENL
Ga0272435_1000006459F001253GAGVTFIKDAVKDMLISSTMSSSNDFFVSKSLTIKCILFSDKISYSLKSLIDIEAANYSFIDELTAQNVCDHLQIESLSLIKLKSIRKLNDHYVKKLITHAIYLNLTVQNHMKRFIFMLITQLSQHQMILEKT
Ga0272435_1000006467F000597N/AMKDVLISSTMSMSDNSFASESLITECILSSNEISYSLKSLIDIKAADYSFIDEVITQIVCDQLQIKLLTLIKAKSIREFDNHYAKKLIIHVIYSNLTVQDHMIDTASMLITQLDQHQIILEKT
Ga0272435_1000006471F013598N/AMNFIINLFDSYNYNAILTVICRLSKERHYISCITDDENITAEKTAEMLIQ
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