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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000010 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 320291 |
| Total Scaffold Genes | 372 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 222 (59.68%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001253 | Metagenome | 736 | Y |
| F003820 | Metagenome | 466 | Y |
| F013598 | Metagenome | 269 | Y |
| F018839 | Metagenome | 232 | Y |
| F021452 | Metagenome | 218 | Y |
| F032102 | Metagenome | 180 | Y |
| F036036 | Metagenome | 170 | Y |
| F037508 | Metagenome | 167 | Y |
| F069514 | Metagenome | 123 | Y |
| F094626 | Metagenome | 105 | Y |
| F098340 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100001010 | F037508 | N/A | VNHYSTEKICIVYVIFRLEDDADQQIYAKHHVDVFSLYQSLSELLKHLKEIYKDQNLIQKCRCKYVALKQLNKFFSFFYSEFTKIFSFLNYDDIILMNDIQNKINNHLQNMLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLCDKQ |
| Ga0272435_100001011 | F098340 | N/A | MIKVVVYQTLVKNKKIKIFFLIISEINKALNSVEDFAKLNEMISVMSLNELKKKLLIIYHDFLNVFNKEKITQLFLHQSYCQNSSLVRSILASSS |
| Ga0272435_100001012 | F003820 | N/A | MKLFSYLKYDDCILMNDLQNKINNRLQNTLSICLEDFASLHHLKIFLQNVNNKQRVNYQLRSQLCTVIIKVIIISDKCAVTSLSAVMTLIIEYIKSIIFSISESVRSSIVCYICKISDHLFKNCSQNKIDILTSHAFTLHLHEIIISKNKEKKKISSSSKNSKIKN |
| Ga0272435_100001013 | F000597 | N/A | MKDVLISSTMSMSDDSFAFESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIVQIVCDQLQIESLTLIKAKSIQEFDDYYVKKLITHVIYLNLTVQDHTINTASMLIT |
| Ga0272435_100001017 | F032102 | N/A | MKIADLKKNNDQSIYKQILEINEINKNCMLLCKAIARDETQYEDIKLKNCQTQNEILYHDSQL |
| Ga0272435_100001018 | F013598 | N/A | MNFIIDLFDLYDYNAILTVICRLSKERHYIFCITDDEDITAEKTAEMLIQ |
| Ga0272435_100001019 | F036036 | N/A | MLISLIHHLFSCFDQSFTSEDQSLVHLFRYILDLINLQAFASAFILNDVRVEAHMRMKALVHEEENQEDD |
| Ga0272435_10000102 | F094626 | N/A | MFLNERNIIIARFFKKLNDKMLNSFINLNFIDSSYKLKLLKSMHVHDVFHSDLLCSVVDDFLSDQKNELSNSIVINDEDE |
| Ga0272435_100001022 | F021452 | N/A | MSDDSFDFKSFIVNIILSSLEKIFRSFTLIDIEVIDMTFINESLMSKLCECFDIQSILLSKSKSIQSYDEISDQKLIIHTLYILIMIQEYKNEMILLLITCLDQYKIIIENL |
| Ga0272435_10000103 | F069514 | GAG | MIEFVDDNALFSIIFSISFFLNKDFHSCMSFELDDIEYESSYECLQMTKVKNIFEHMNKTLKFICKSLVKT |
| Ga0272435_10000107 | F018839 | N/A | MMIMKVVTFDHLTSDLYAAVSIIAIFIESKDEVKLIELNDFTILLNEDDFSLSRVMTEKINLFNI |
| Ga0272435_10000109 | F001253 | GAG | VTFIKDAMKNVLISSTMSDLNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFINELIAQNVCDYLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTIQDHMKRFVFMLITRLDQHQMILEKT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |