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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000017 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 281530 |
| Total Scaffold Genes | 328 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 156 (47.56%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F025887 | Metagenome | 199 | Y |
| F032884 | Metagenome | 178 | Y |
| F036036 | Metagenome | 170 | Y |
| F069514 | Metagenome | 123 | Y |
| F089603 | Metagenome | 108 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_1000017249 | F036036 | N/A | MLIRLIHHLFSCFNQSFMSKDQCLVYLFKYILDSINLQAFANAFILDDVRVEAHMRMKVHVHEEKDQEND |
| Ga0272435_1000017251 | F013598 | N/A | MNFIINLFDSYNYNVILTVICRLLKERHYISCIIDDENITVEKTAEMLLQ |
| Ga0272435_1000017252 | F017941 | N/A | MKIADLKKNNDQSIYKQVLNVNEIDENCTLLREAIARDEA |
| Ga0272435_1000017278 | F013598 | N/A | MNFIINLSDLYNYNIILTVICKLSKERHYIFCITDDENITVKKTAEMLLQ |
| Ga0272435_1000017279 | F036036 | N/A | LLSCFDQSFASENQCFIHVIEYIFDLSDLQMFANAFILDDVRVEAHMRMKALVHEEENQEND |
| Ga0272435_1000017284 | F032884 | GAG | MTIRNERVERQECEETKKNESTMTRIEKERLYAQTIDVIDQRKDIKQRL |
| Ga0272435_1000017286 | F089603 | AGG | MYIDALQIRKKIAEIKTETETTVIFTHELIRYSKATSVYNKIITTKAKLQAISDAIAICSEKALKTAKFECT |
| Ga0272435_1000017296 | F001253 | N/A | VTFIKDVMKDVLISSTMSSLNDLFALKSLTTEYVLSSNKISYSLKSLIDIKAIDYSFINELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFIFMLIT |
| Ga0272435_1000017302 | F069514 | N/A | MIKFIDNNALFSIIFLISFFLNKDFHSCMSFELDVIEYESFRERLQMTKVKNIFEHMNKTLKFACKSLVKT |
| Ga0272435_1000017303 | F094626 | N/A | MMKQVNKHRKEVDYNVKSKMFLNERNIVTARFFKKLNDKMLNSFINLDLIDSSYKLKLSKFMHVHDVFYSDLLCSVVDDLLSDQKNEFSDSIMINDKNE |
| Ga0272435_1000017317 | F089603 | N/A | MYIDASQIRKKIAEIKTETEMTMIFTHELIRYSKATSIYNKIITTKAKLQAINDAIAICSEKALKNSEI |
| Ga0272435_1000017327 | F025887 | N/A | MSDDSFNFKLFTVDVILSSLEKIFRSLALINIEVIDMTFIDESLMSELCECFDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |