Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000023 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	261512
Total Scaffold Genes	304 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	74 (24.34%)
Novel Protein Genes	38 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (15.79%)
Associated Families	30

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F019584	Metagenome	228	Y
F026450	Metagenome	197	Y
F028978	Metagenome	189	Y
F032884	Metagenome	178	Y
F036036	Metagenome	170	Y
F039410	Metagenome	163	Y
F040408	Metagenome	161	Y
F041516	Metagenome	159	Y
F042102	Metagenome	158	Y
F044227	Metagenome	154	Y
F046102	Metagenome	151	Y
F048017	Metagenome	148	Y
F048685	Metagenome	147	Y
F049323	Metagenome	146	Y
F068292	Metagenome	124	Y
F069514	Metagenome	123	Y
F070710	Metagenome	122	Y
F075493	Metagenome	118	Y
F078020	Metagenome	116	Y
F083460	Metagenome	112	Y
F084912	Metagenome	111	N
F094620	Metagenome	105	Y
F104131	Metagenome	100	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000023107	F044227	N/A	MMXLQLKSSNDETCIHALLELIASAIKNAMKRQLLKLLNNHYYHEESQSSCKNDDENEASETI
Ga0272435_1000023145	F032884	GAG	MIIRNERVEREECEETKKNESTMMKVEXKRLYMQTIDVIDQXKDIKQQLESDYM
Ga0272435_1000023146	F041516	N/A	MTQKVIYIHEAYNSSFKNYEVIHEKESLSDIEKILHMSRKCILVKNFNLHHLTXEKSFYS
Ga0272435_1000023152	F075493	N/A	MQLVXTMHEYMLRHLMTSFTIASQAIHVXNVSKVQISIQIYAFSSDIHCKSAFCFLKIITHLYCLIAQMQSLCXDCINICNAFFVLFSSLISLILVILLYCDAIICXSHYEEEENASFASQLYLCIFLNEDIQKYYFLDDEXARNDAINFC
Ga0272435_1000023155	F083460	N/A	MQLRMKSSDSQAYSDALFKLNASSIKYVTKRRLHKLLNHHLNHEESQSNSENDDENEAAEAV
Ga0272435_1000023163	F040408	N/A	MYNYELIFDIYIKNDAMKEEVSAAKKDVEMLQNVQNMLMKXX
Ga0272435_1000023170	F044227	N/A	MKSSDDEACTHALLKLIAFAIKNVTKCXLLELLNNHHHHEEFQSSSEDDDENKALEAI
Ga0272435_1000023189	F049323	N/A	MNEESAEQMKRSAENDSKRCARFKLGIASXLALIKLIRIKSELXLIQACL
Ga0272435_1000023190	F007840	N/A	MIDAIERQNNIRESIKSTARLIELLDDLQLIKYASFISINRISDKKPLLIARESNRSRESINFQIKQQKXLHLLLSSIILRSISFF
Ga0272435_1000023195	F008115	N/A	MNFITELSLSKNYNVICTIICHLFKERHYVFCHXEDNDISIEETVXIMLXNIYQLHDLLSSIILNRDFQFISIMXQSLCKQLKIKVNLSTVYHSEINDQLKQVNQDVERELXIYCNYMQNDXAKXLSMMKFSDNFNTFSTILIIFFYFNKDFHSRMSFNSDMTDYKMTCQRIETRKIDDIVIXMSELLIFNHQQLKKIKQIIEAQMNKHRRDVIYEVDDLVXLIFENIKITKLCKDLKDKQLNLYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLXSSLNDFLSKQHSEFSRLMIIEENEEHXKVDNILNFRRYKERLQYKIKXIEIDHDDEXYYVDKEKFDDSKKVLNEFHKLYSNKLH
Ga0272435_1000023197	F068292	N/A	MSRQDTQSAEQXVNQKEVCSQREFSTLSDNKNKNDHHKFIKLLNSLIFIETNDFIXETXNIKIADKLNVNKNYYSTEKIHIIYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIXKCRCKYVTLKQLNKLFSSFYSEFTRIFSFLNRLIIKSSFNINLLTQLKYLISIFXFNLNTRFQHSDLTXYQS
Ga0272435_1000023200	F046102	GAGG	VTFIKDMMKNVLISSTISSSNDLFALKSLTIECVLFSNEINYSLKSLINIEAADYLFIDELIAQNVYDHLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKHFVFMLITXLDQHQMILEKIXMNKIKITIDMRDDHLQFSSFEAYIKASIKAHSTVLSSKKIAIEQKSSIS
Ga0272435_1000023201	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEDLTELNDFMILLNEDDFLLSRVITEEINLFSI
Ga0272435_1000023230	F003820	N/A	MKLFSYLKYDDHTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQXVNYQLHSQLCTVIIKVTVVSDKCATTSLLVMTLIIDYVKSTSESARSFIICYTCKTSNHLFKNCSQNKINTFASCAFTLRLHEIIISKNEKNEKMSSFKDSEAKN
Ga0272435_1000023231	F000597	N/A	MKKMLISSMMSMSDNSFASESLTTEYVLSSNEINYSLKSLINIEAADYSFINEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKRLIIHVIYLNLTV
Ga0272435_1000023235	F048685	N/A	MKDKELSKRQMHXVQKLANFNFKIMYXSDKQNIKIDALTRXADFVLKDLDDERVHYQRTTILTLNXMKITDLKKNNDQSIYKQVLDVNEIDENYTLLREAIARDEA
Ga0272435_1000023236	F013598	N/A	MNFIIDLSDSYNYNIILTVICKLLKERHYISCIIDNEDIIVEKIAEMLL
Ga0272435_1000023238	F036036	N/A	MLVSLIHHLLSCFDQSFASEDQCLIHVIKYIFYSCDLQTFASAFILDDVRVEAHMRMKALVHEEESQEDDXKQDIIVNKLNHE
Ga0272435_1000023239	F008115	N/A	MLXNVYRLHDLLSSIVLNRNSQFISIMXQSLCKRLKIKVNLSTVYHSEINDQSKXVDQDVERELQIYCNYMQNDXAKXLSMMKFSDNFNTFLTILMISFYFNKDFHSRMSFNSDTTDYKMTRQRIEARKIDDIVTXMSELLIFNHQQLKKIKQITEAQMNKHRQNVIYEVDDQVXLVFENIKIIRSCKDLKDKQLDLYSITVKVEIFYRLQLFRSMKHIHSMFSSKCLQSSSNDSLLKQHSELSKLMIIEENEKHXKVNNILNFRXYRERLQYKIKXIEINCDDEXYYVNKEKFNDSKKVLNEFHKLYLNKLH
Ga0272435_1000023242	F019584	GAG	LIQLSTLKEIYFYLIQLNNDQRAIQEIKNREAMIKVQTTKQIIFVEESVKATRRIIEMKMTDQLKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFDSESDSKN
Ga0272435_1000023243	F104131	N/A	MSRFFKERFEASFFIVEDNDSFAEIITSSMTMKALKKXCEELKAMLQAREITSSSSIYSERSRFQKILDSSLFTDEKNFIXKNXYEKV
Ga0272435_1000023244	F007840	N/A	MIDAIERQNNTREFIESTARLIELLDDLQLIKYASFTSINRISDKESLLIARESNRSRESINSQIKQQKXLHLLLLSIARSISFF
Ga0272435_1000023253	F070710	N/A	MIEQSFQQILQYNIRKSLKIQKSFLINRKVRDFNIIVIQKQSCNINDIQSFNSAHNFFYLVKNTSSQSRTCIYVNKCLRFDQXMIETIESNICLIRILTYNIDDKIQTLQLINIYNSCSLFFTFIKKSSIISHLSKLLKDDCKQLIMKDFNLHHSH
Ga0272435_100002335	F007840	N/A	MINVIKRQNNTREFIKLTARLIELLNDLQLIKYASFILINRISDKESSLIARESNQSRESINLQIKQQKXLHLLLLSIALRLISFF
Ga0272435_100002336	F026450	N/A	MSHFFKEHFKASFFIVEDNDSFAEIITSSMTMKAMTMKALKKRCEELKAKLQAREIISSSSIYFKCSRFQKILDSSLFIDEKNFIXKNXYEKVQNKLKINIDLFSSEXVKLSYVHFRLFDDAAEIIQSRRERDCFNSYKIVDELLKELAQLFNDLNKEVNFYKDYYNLIQEQKKFNEFYTQFQRLFFYLDY
Ga0272435_100002337	F084912	N/A	MKMTDQSKSRNAVLTSVKENDLLIENCFLCHKSDHTSKECLNKSFRINTLNDEFDHSLNFDSESDSKN
Ga0272435_100002338	F078020	N/A	MQFFFDHLINAXKDAVLTLNIEKFFFKAVKVDCXSTLRAELIKEFNDRDYFECEALTDIEKTEMKASNXFEKTMTSFCIFSSISFLFIQSFSNMTSXXFISAINIETVNFLXLLTVRLSRILXIIIFFVSFSSYFLINFSLASCMSXISSFXHIXSTSFVXIKM
Ga0272435_100002341	F094620	N/A	MISFYFNKDFHSXMSFNSDTTDYKMTRQHIKVKKIDDIIIXMSELLIFDHQQLKKIKQITEAQMNKHKXDIIYEVNDQVXLVFENIKITRSCKDLKDKQLDLYSITVKVEIFYRLQLSKSMKHIHLMFSLKCLQSSSNDSLSKQHSEFFKSLIIEENEKHXKVDDILNFRQYKERLQYKIKXIEIDHDDEXYYVDKKKFNDSKKVLNEFHKLYSNKLH
Ga0272435_100002364	F018839	N/A	MMIMKVVIFDHLTSDLYAAVFIIAMFIELKDEAKLNKLNDFTILLKKDDFLLSQVTTEEINLFNI
Ga0272435_100002365	F046102	GAGG	VTFIEDVMKDVLISSTMSSLNDFFALKSLTTECVLSSNEISYSLKSLIDTEAADYSFINKLIAQNICDHLQIESLSLIKLKSIRRFDDHYVKKLITHAIYSNLTVQDHMKRFVFMLITXLDQHQMILKKTXMNKIKMTIDMKDNRLQFSSFKAHIKASIKAHLIALSNKKIAIE
Ga0272435_100002367	F068292	N/A	MSRQNTQSAEQQVNQKVEXSSTFKAHFQXKSFTLSENENNHHKFIKLLNLLIFIETNDFIXKTXNIKIADKLDVNVNHYFTEKIYIVYVIFRLEDDADQQIYAKHHIDAFSFYQSLSELLKHLKEIYKDQNLIQKYHHEYIILKQLNKSFSSFYSEFTKIFSFLNYNDIILMNDIQNKINNHLQNALSVCLIKFSLLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272435_100002370	F069514	N/A	MQNDXAKLLLMIEFVNNNALFSVIFSISFFLNKDFHSCMSFELDVIEYESFCERLQMTKVENISEYMNKTLKFACESLVKTXKQMMK
Ga0272435_100002371	F028978	N/A	MKIADLKKNINKSIYKQILEINKIDKNYMLLREVILKDEAQYKDIKLRNCXVQNEILYXSDLLXVFFNKHL
Ga0272435_100002382	F042102	N/A	MTRSSESASIARYELRNARRESLLPQNRTVSEEEDTNASLNTEEENTNALLFDYEMIKISINTELNAXISTHEADNIVAFIKYICQQHDIEIETHNDMIQMLEDVNKINITLKITQTRLQKENRNKNVIIHHLEAASSRQSTSISEDRFSKSIKLLDSSLFKDSTQNVDNXLFXMQNKLKTNKNHFSIKELKIAYIESRVSEAAIKHIASRMQDIFLNSFLEVEEVLSIINKMYDDFNHCHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDDLQHKISSDLQRATLNKRITNLNEFIDICMQVNVRLTELNARSVIKASATQAARSVSNTLTARLTSSVSLXKKLRRSNLDSIQKELFKKELCFKCKKSEHRAYDCFKTT
Ga0272435_100002385	F008115	N/A	MNFITELLLSEDYNVICTIIYRLIKKHHYVFCHXEDDDISVEEMIXIMLXNVYQLHDLLSSIVSNRNFQFISTMXKSFCKRLRITASLFTVYHSEIDNQLKQVNQDVERELRIYCNYMQNDXAKXISMMKFSDNFNIFSITSMILFYFNKEFHSXMSFNSDTTDYEMTHERLEARKTDDIVIQMKELLSFDHQRLKKMKLIIEVQINKHRRNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITAKMSTFYHLHLSVSMKHLHSMFSSKLLRLYSEDSLSEQHSESLKSITIEDDEHXKIDNILNFRRYRGRIQYKVKXKDLDRNDEXYYVDKENFDDSEKVLNEFHKLYSNKSR
Ga0272435_100002386	F048017	N/A	MSLANVSESAQRLEDHFQTILTSDKVDVLSVELEANLYQRVCMINQTDELCSEYRQAMNDKKLKFHITKLKNCKIIDDILFRKDLLXVFENMHTKLLQEVHDQSSIFHLDNKXIIDLV
Ga0272435_100002388	F039410	AGCAG	MSFKFXVVSSIKETFKTFKSHXVLYAISLLIFVMNRAKTSILFFFERFNSVLNEAMFMLXIKNDSYRAAIETSCLSIVEVLVXVIEESKVDRDQLECFELREIEKIEIEVFNXFEKTMTLFCIFSNISFLFIQSLLNMTSCXLISAINIDTVNFLXLLMMRLNRILXVIVFLNIFSS
Ga0272435_100002392	F104132	AGAAG	MNEILNSQVKNSQLKYLIKXTEIEENSXVKFVNVMNIIKVMNVYHAXNFNRSSKNSXIVYVQESSNSEYESKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000023

Overview

Ecosystem & Geography

Associated Families

Sequences