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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000024 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 257832 |
| Total Scaffold Genes | 327 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 184 (56.27%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F025887 | Metagenome | 199 | Y |
| F032102 | Metagenome | 180 | Y |
| F048017 | Metagenome | 148 | Y |
| F061401 | Metagenome | 131 | Y |
| F081945 | Metagenome | 113 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100002417 | F001253 | GAGG | VTFIKDVMKNVLISSTTSSSDDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIELLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLIIRLSQHQMILEKT |
| Ga0272435_10000242 | F081945 | N/A | MPSRLSTEERSEKFRTRFSQISDADSTKSSSAASFIHEDDESFAETIILLVFYEI |
| Ga0272435_100002422 | F032102 | N/A | MKIADLEKNVSESIHKQVLDVNEIDENCTLLREAIERDEAQCKDIKLKNYRVQNEILYKDSQL |
| Ga0272435_100002423 | F013598 | N/A | MNFIINLSDSYDYNAILTVICRLLKERHYISCITDDENITVEKTAEMLLQ |
| Ga0272435_100002425 | F094626 | GAG | MMNQINKHRKKINYKIESKMFLNERNIVTARSFKKLNDKMLDSFINLDFINSLYKLKLSESMHVYDAFHSDLLRSVVDDSLSDQKNESSKSIVIKDEDE |
| Ga0272435_100002431 | F025887 | N/A | MFDDSFNFKSFIVDVILSNLEKIFRSLVLINTKVIDMTFIDESLMSELCECFDIQLILLSKSKLIQLYDETSDQKSITHALYILIMI |
| Ga0272435_10000244 | F061401 | N/A | LNNDQRVIQEIKNKLKRVNDLSKTIFHRATIVTQSVDHSKSDQLKSRDAILTSVKEADVLVEICFICHKSGHSFRECLNRSTRINAVNKEYDRFDFNFNFDFDSKN |
| Ga0272435_10000245 | F006206 | GAG | LCKLDEILSKENYFEKSFLIDAHLISQKRSFSLRSLINSDSVVYMIIHFNLVDKVCKKLKIQPISLTKEKLIRDYDEKISKKTITHKILLNLIIESHKKLTVSMLIVDIDHHEVILSKL |
| Ga0272435_10000248 | F048017 | N/A | MFIDHQTLKIFMKNKQLSRRQVNYLNILSKFNFQIIFRSGKINTKVDALIRMLLANVSESAQRLEDCFQTILTLDRVDVLSVESKANLYQQVCMINQIDELCNKYKQAMNKNKLKFHIIKLKNCEIIDDVLFRKDLL |
| Ga0272435_10000249 | F008668 | N/A | MTHEQLEARKTDDIVIQMKELLSFNYQQLKKTKLIIEVQINKHRRDVTYKVDN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |