NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1000025

Scaffold Ga0272435_1000025


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000025 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)255932
Total Scaffold Genes277 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (25.63%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F008115Metagenome338Y
F008668Metagenome329Y
F009377Metagenome318Y
F013598Metagenome269Y
F017941Metagenome237Y
F025887Metagenome199Y
F032884Metagenome178Y
F048017Metagenome148Y
F055318Metagenome138Y
F079402Metagenome115Y
F096306Metagenome104Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000025101F096306N/ALNTLNSLCNIKAMFAMYDNYAVDSLIIDDDFNEERSCKDNSELHASMILFNIATLIATNVKIVFIELNNK
Ga0272435_1000025102F003820N/AMNDLQNKINNCLQNALLVCFEDFTSLHHLKSFLQEVNNKQRVNYQLCSQLHTVIIKVTVVSEKCTATSLSMMTSIIDYVKSIIFFIFKSARSFIICYTCKTLSHLLKNCSQNKIDTSASQAFIFHLHEIIISKNKENEKMSFKNSETKN
Ga0272435_1000025103F000597N/AMLDDSFTSESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIMQIIYNQLQNESLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQDYMIDTASMLITQLN
Ga0272435_1000025107F017941N/AMKIADLKKNISESIYKQILETNEIDENCMLLREVIARDET
Ga0272435_1000025108F013598N/AMNFIINLSDLYDYNAILTVICRLSKERHYISCIIDDEDITVKKIAEMLLQ
Ga0272435_1000025123F009377AGAAGMNASLNIKEENMNTLLFNHKMIKISISTEMNAXISTHEADDLVAFIKYICQQHDIEIKIHNDMIQMLNDINKINIELKAINIKLKVTQTTLNAVXMHLQKEIKKKNVIICHLEAILSRLSTSISKDRFLKLIKLSDSLLFKDSRQNVNNXLSXMXNKLKMNKNHFSIKEMKIAYVKSXVSKTMIKHIAFRMRNMITNLFLEAEKILSIINKMYNDLNRHHMTQRQILKLYQNKIFFHEF
Ga0272435_100002514F048017N/AMKNKQLSRCQVNYLNILLKFNFQIIFRSDKMNTKVDALTXMSLANISESAKRFKDRFQTILIFDRVDILSIDSKLSANSKSEVNLYQRVQLVNQMNELCSECRQAMNDNKLKFHITKLKNCEIIDDVLFRKDLLXISENMHTKLLQEVHDQSSISHLDNKQIIDLVQRFYYXSNHQATIQ
Ga0272435_1000025148F055318N/AMLHDDEALCIDCMQSFRDHADFDNLNAHATSNLHADEKVK
Ga0272435_1000025153F008115N/AMNFITELSLSEDFNIICTIIYCFIKEHYYVFYHXEDDDISVEEMIXIMLXNIYQLHDLFNSIVLNKDFQFISTMXKSLCKRLRITASLFTVYHFEINDQSKXVNQDVECELRIYCNYMQNDXIKXISIMKFSDNFNIFSITSMILFYFNKKFHSXMSFNSDMTDYKITHERLEARKANDIVIXMKELLNFNCSQLKKTKLTIEIQINKHKRNVTYEVDDXVXLFFRNVKTMRLCKDLKDKQLNLYQITAKVNIFYHFHLSISMKHLHSMFSLKLLRLYSEDSLSEQHSESLRSITIKDDEHXKINNILNFKCYQDQIQYKVKXKDLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272435_100002528F025887N/AMFDDSFDFKSFIVDVILNSLEKIFRFFTLINTEVIDMTFINESLMSELCKRFNIQSILLSKSKLI
Ga0272435_100002530F079402N/AMQNKLKMNKIHFSIEEMKIVYVKSXVSETMIKYIALRMRNMIMNSFLEAEEILLIINKMYNNLN
Ga0272435_100002560F096307N/AMLYIIVTQIDASLKEDVLKHKKDVDLKNVCNIKKYICHRNLLIICNTKKCVCLKDNKSXLEDARKEKRCXVISESNLSQI
Ga0272435_100002586F008668N/AMSFDSDATDYKTIHECLEARKADNIIIXMKELLIFNHQQLKKTKQIIEAQINKHKXDVIYEVNDXV
Ga0272435_100002596F032884N/AMIIRNERVKRKECKETKKNESTMTRVERECLYMQTINVIDQXEDIKQXLXLDYM
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.