NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000026

Scaffold Ga0272435_1000026


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000026 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)253576
Total Scaffold Genes317 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)208 (65.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F017941Metagenome237Y
F069514Metagenome123Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100002610F001253GAGVTFTKDAMKDVLISSTMSSLNDFFASKSLTIECVLSSNEISYSLKSLIDTEAVDYSFIDELITQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLDQHQMILKKT
Ga0272435_100002615F017941N/AMKIADLKKNISELIYKQILETNEINENCTLLREAILKDEAQYEDIKLRNC
Ga0272435_100002616F069514GAGMIEFIDNNALFSVIFLISFFLNKDFHSRMSFEFNVIEYESSCERLQTTKVENISEHMNKTLKFACKSLVKT
Ga0272435_100002620F081945N/AMSSYSFTEEHSEEFQNRFSQIFDVDSLKSLSAASFLHEDDESFAKTIILFIFYEI
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