NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000029

Scaffold Ga0272435_1000029


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000029 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)244914
Total Scaffold Genes234 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (25.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F007840Metagenome343Y
F028978Metagenome189Y
F064252Metagenome128Y
F078020Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000029211F000597N/AMKDVLISSMMNMSDDFFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDNHYAKKLITHVIYSNLTV
Ga0272435_1000029215F064252N/AMKSLSRQSIKNHTRRKSFTLFDNDHHKFFKFSNSFIFTDEDESTXNSXRIKMNDKLQTNVNHFNNENICIVYVISRLEDDALHSYISIDELFKHLKEIYNELNRNQKCRCKYNTLRQTDKSFNVFYFNFMKLFSYLDYDDCILMNDLQNKINNHLQNALSVCSENFTSFTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTIVSDKCTATSLSAVTTLIIEYVKSTIFSISESVRSSIICYICKISDHLFKNCSQNKIDTLTSCAFISRLHEIVISKNKENEKMSSFEDSEAKN
Ga0272435_1000029224F028978N/AMKIADLEEKENDESIYRLILEANRINKNCILLREVVLKDEAQYEDTKLRDCRVQNEILYRNDLL
Ga0272435_10000293F078020N/AMRFFFDRLTSAXKGAALTLNIEKFFFEAVEVSRXSTLKTERIEEFDDRDHFECEALTDIEKTEMKASNXFEKTMTSFRISSSISFLFIQSFSNMTSXXSISAINIETVNFLXLSTVRLGRILXIMIFLVSFPSYSLINFSLASRMNXISSFXHIXSTSFVXIKM
Ga0272435_10000295F007840N/AMIDAIERQNNTRESIESTARLVELLDDLQLIKYASFIPINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLSSIALRSIPFF
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