Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000033 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000033 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	239474
Total Scaffold Genes	264 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (24.62%)
Novel Protein Genes	16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

239474

Total Scaffold Genes

264 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (24.62%)

Novel Protein Genes

16 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F007840	Metagenome	343	Y
F032102	Metagenome	180	Y
F032884	Metagenome	178	Y
F033266	Metagenome	177	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F046102	Metagenome	151	Y
F064252	Metagenome	128	Y
F065268	Metagenome	127	Y
F078020	Metagenome	116	Y
F094622	Metagenome	105	Y
F104136	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000033132	F000597	N/A	MKKMLISSMMSMLNDSFTFKSLITECVLSSNEINYSLKSLIDIEAADYLFINEVITQIVCDQLQIKLLTLIKAKLIQEFNNHYVKKLIIYIIYLNLTV
Ga0272435_1000033145	F046102	N/A	VTFIKNVMKDVLISSTTSSLNKLFASKSLTIECVLFSNEISYSLKSLIDTEAADYSFIDELIAQNVYNQLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHMKRFVFMLITXLNQHQMILEKTXMNKIEVTIDMRDNHLQFSSFKAHIKASIKAHSTVLSSKKITIEQKSVIF
Ga0272435_1000033157	F041516	N/A	MIQRVIHIHEAYNLSFRNYEIIHEKENLSDIEKILHMLKENILVEDFNLHHFT
Ga0272435_1000033167	F104136	N/A	MIFSIRLAQIFSESXSTNKQXIXTNSLISACKSTFDXXNXMLNQLSRHQQLKSLALLLASXXXSLLRSQLQSLYERNSEYXTLILLERSCLKKNFASNARSQNIEHATVLSQLRCTKSQQIXKTTCLHQSSDXEQYTHILLHQHVXXFI
Ga0272435_1000033170	F065268	N/A	MTRSTELESKSVSTTHYETRNAERESLLSQNXTASKEENMNALFFNHKMIKISISTELNAXISAYEADDLVIFIKYIC
Ga0272435_1000033171	F094622	N/A	MNLIINLNDNNNRDNVTAIAMRMNRELNKRLRESTLVITHHDELKELVAKVKHLANVVIVNQECHEKIYKVYSDNQTSLKTVKVMISTKDQTRLQ
Ga0272435_1000033172	F036035	N/A	MQRKHHELEKASRNHERNDNNHSNDTFDKHTESISDCDIIEELNEREKK
Ga0272435_1000033186	F033266	N/A	MSSHLFTEEHSEEFRNHFSQISDADSLKSSSAASFLHEDDKLFAETIISLVFYEIXKAXSLVLDKETDQLYKLNKQQEDEIKELKSRLQVKENTSSDSIHSESSRSQKYLILRCLLMKRTLFKRTDTEKFRIN
Ga0272435_1000033193	F032102	N/A	MKIADLKKNINESIYKQILETNEIDENCTLLREVVLKDETQYEDTKLKDCRVQNEILYXDNLLXVFFNEHLQMKLI
Ga0272435_1000033203	F000597	N/A	MKDVLISSMISMSDNYFASESLTTEYILSSNEISYSLKSLIDIEAADYSFINKVITQIVYDQLQIKSLALIKAKSIQEFDNHYAKKLITHVIYSNLTV
Ga0272435_1000033204	F064252	N/A	MLNLKNKLKEVLHSANQSXSQQSTKSQASIKNYTRXESFTLFDNDHHKFFKFLNSFIFTDEDELTXNSXRVKINDKLQTNINHFDNENICIIYVISRLEDDAVKHIFAXYXHDALHSYILINELFKHLKEIYDELNRNXKCRCKYNALKQADKSFNVFYFNFMKLFNYLEYDDCTLINDLQNKINNCLQNILSICSENFTSLTHLRIFLQDVNNKQXVNYQLRSQLCIVIIKVTVISDKYAATSLLMMTLIINYVKSIIFSIFESDQVKSSIICYICKILKHLFKNYS
Ga0272435_1000033212	F032884	GAG	MIIRNERVERQECKETKKNESMIMRIEKERLYVQTIDVIDQXKDIKQRLXSDYM
Ga0272435_1000033231	F032884	GAG	MTIRNERVECKECEETKKNESTIMRIERKRLYVQTIDVIDQXEDIKQRLXPGYM
Ga0272435_1000033241	F032884	GAG	MTIRNERVEHEECKETKKNESMMTRIEQERLYMQTIDVIDQXKDIKQRLXSDYM
Ga0272435_1000033261	F007840	N/A	MINAIERQNNTRESIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLSSIALRSISFF
Ga0272435_1000033263	F078020	N/A	MMKISMRLFFDHLISAXKDAAFTLNIEKFFFEAVEVSRXSTLKAERIEEFDDRDHFECEALTDIEKTKMKASNXFEKTMTSFCISSSISFLFIQSFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFFVSFSSYSLINFSLASRMSXISSFXHIXSTSFVXIKM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000033

Overview

Ecosystem & Geography

Associated Families

Sequences