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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000046 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 216804 |
| Total Scaffold Genes | 200 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (30.50%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007840 | Metagenome | 343 | Y |
| F025887 | Metagenome | 199 | Y |
| F052973 | Metagenome | 141 | Y |
| F057010 | Metagenome | 136 | N |
| F074203 | Metagenome | 119 | Y |
| F079402 | Metagenome | 115 | Y |
| F098340 | Metagenome | 103 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_1000046196 | F102179 | N/A | MYIRSMLLKIMTLTMQETHLNEVHFLKNKIFQFESTTLRRINVETLTHRNYNVTEKQLNSVVKTVDCKQLILHAIVKVLTIHEIIYNFNSKFIIKLIKILQQEDEFTVKLKANEMMSI |
| Ga0272435_100004646 | F057010 | N/A | MSRFFKEHFEASFFIVKDNDSFAEIITSSMTMKALKKRCEELKAKLQAREIISSSSIYSERSRFQKILDSSLFIDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNLYKIIDKLLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIINLKNKINLRLQFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAXTTKQIIFAEESVKATHRIIEMKMTDQSKSRDAVLTSVKENDLLIKNCFLCHKSDHTSKECLNRSFRINALDDKFDHSLNFDSESDSKN |
| Ga0272435_100004647 | F007840 | N/A | MIDAIERQNNTRESIESTARLIELLDDLQLIKYASFTSINRISDKESSLIARKSNRSRESINSQIKQQKQLYLLLLSITLRSISFF |
| Ga0272435_100004651 | F079402 | N/A | MQNKLKMNKNHFSIKEMKIAYVKSQVSETMIKYIALRMKNMITNSFLEAEKILSIINKMYDDFNQYHMIQQQFLKLY |
| Ga0272435_100004652 | F025887 | N/A | MSDDLFNFKSFTVDVILNSLEKIFKFLALIYTEVIDMTFIDKSLMLKLCEHFNI |
| Ga0272435_100004653 | F098340 | N/A | MIEVIVYQTLVKNKKIKIFFLIISEINKVLSSVKIFAKLNEMIFVMSLNELKKKLSIVYHDFLNVFDREKIMQLSLHXSYNHKIKLEEENQLSKS |
| Ga0272435_100004655 | F052973 | GAG | MFRDCARLERDVFVTRKEDDVDEQDVDERKECWGRKRVLSHI |
| Ga0272435_100004662 | F074203 | N/A | MFSHSFTEEHSEEFRNHFFYISDAESRTKLSSAASFIHEDDESFAEMIILFVFYEIXKTXSLALDKETDQLYELDKQQEDEIKELKTKLQAKENTSSDFIYFERSRSQKISDSSLFTDEKNSTXENXYGKIQNKLEINIDLFSNEXVKLSYVHSKLFNDAAKIIQTRREHDCVNLYKIIKDFLKKLTQLFDDSNKKVNFHRKYYNLIQESKKFSEFYTQFQQLFFYLDYHEKQLIVDLKDKIHSHLXFVXVD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |