Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000055 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000055 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	202310
Total Scaffold Genes	233 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	117 (50.21%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

202310

Total Scaffold Genes

233 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

117 (50.21%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F008668	Metagenome	329	Y
F017941	Metagenome	237	Y
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y
F102179	Metagenome	101	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10000551	F017941	N/A	MKIADLKKNISESIYKQILEINEINENYTLLREAILKDETQYKDTKLRDY
Ga0272435_100005510	F102179	N/A	VINDVEKTFVHSVSENMSTCSAMHVRSMLLRVMTLTVQEIHLDEVHFSRDKISQLELTTLKSTNVKTLTHRDRNVAEKQLNSVAKTVDCKQLISYAIVRVLTIHETTYDFSSKFVVELIKILQQEDKFAVRLKADETTSI
Ga0272435_100005512	F048019	GAG	VYALVMINVVEESIVEHQVKAMNNVTSRITNALEAQTLLIKLKKYEDVFSTESAGKLSLHEDHDHAIEITAKSLYKSLYNLSNTELATLRQYLNDVLAKE
Ga0272435_100005517	F000597	N/A	MKEMLISSMISMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAAEYSFIDEVITQIVCDQLQIKLLTLIKAKSIQEFDDHYVKKLITHVIYLNLTVQDHMIDTASMLITQLNQHQMILEKT
Ga0272435_100005518	F005901	N/A	LIYELFEHLKEIYNELNRNQKCRHKYNALKQTDKSFNVFYFDFMKLFSYLKYNDCTLMNDLQNKINNRLQNALSVCSKNFTSLTRLKIFLQDVNNKQRVNYQLRSQLRTVIIKVFVVSDKCAATSLSVMTLIIEYVKSTIFFTSESVRSFIVCYICKISDHLFKNYSQNKINTSASCAFILHLHEIIILKNKKNEKISSFKDNETKN
Ga0272435_1000055233	F104131	N/A	MSHLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCKELKARLQAREIISSSSIYFKRSRFQKILDSSLFIDEKNSTWKN
Ga0272435_100005526	F008668	N/A	LKARKINDIVIQMKKLLSFDHQQLKKMKLIIEVQINKHKRDVIYEVND
Ga0272435_10000557	F040408	N/A	MYDYKLIFNIHIKNDAMKEEVSAAKERVEMLQDVQNTLMK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000055

Overview

Ecosystem & Geography

Associated Families

Sequences