Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000070 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000070 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	180662
Total Scaffold Genes	223 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	123 (55.16%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

180662

Total Scaffold Genes

223 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

123 (55.16%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F037508	Metagenome	167	Y
F069514	Metagenome	123	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000070201	F069514	GAG	MIEFIDNNALFSVIFSISFFLNKDFHSCMSFELDVSEYESSRKRLQTTKVKNISEHMNKTLKFARESLVKT
Ga0272435_1000070205	F001253	GAG	VTFIKDVMKNVLISSTTSSSNDLFASKSLTIECILSSNEISYSLKSLIDTEAADYLFIDELIMQNVCDHLQIESLSLIKFKSIREFNDYYAKKLITHAIYSNLTVQDHMKRFVFMLITRL
Ga0272435_1000070206	F037508	N/A	VNHYSTEKIHIVYVIFRLEDNADQQIYAKRRVDAFSLYQLLSELLKHLKEIYEDQNLIQKCCREYVTLKQLNKLFSFFYSKFTRIFSFLNYDDIILMNDIQNKINNHLQNVLSVCLIKFSSLDKLKIFLQDVNNKQ
Ga0272435_1000070214	F025887	N/A	MSDNSFDFKSFTVDVILNSLEKIFRSFALIDTEVTDMTFIDESLMSELCECFDIQSILLSKSKLIQSYDEISD
Ga0272435_1000070218	F037508	N/A	VIFRLEDDADQQIYAKHCVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHCKYVALKQLNKLFSFFYSEFTRIFSFLNYDDITLMNNIQNKINNCLQNALSVCLIKFSSLDKLKIFLQDVNNKQ
Ga0272435_1000070219	F001253	GAGG	VTFIKDVMKNVLISSTTSSSNDLFASKSLTIECILSSNEISYSLKSLIDTEAADYLFIDELIAQNVCDHLQIKSLSLIKFKSIREFDDHYAKKLITHVIYSNLTVQDHMKRFVFMLITRLNQHQMILEKT
Ga0272435_1000070220	F018839	N/A	MMIAKVVTFDHLTSDLYAAASIIAMFIESKDEAKLIELDDFTILLNEDDFSLSQVITEEIDLFNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000070

Overview

Ecosystem & Geography

Associated Families

Sequences