Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000094 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000094 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	158794
Total Scaffold Genes	196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	114 (58.16%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

158794

Total Scaffold Genes

196 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

114 (58.16%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F017941	Metagenome	237	Y
F037508	Metagenome	167	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100009418	F017941	N/A	MKIADLKKKISESIYKQILETNEIDENCTLLREAILKDEA
Ga0272435_1000094182	F017941	N/A	MKIADLKKNVSESIYKQVLDANKIDENCTLLREAKIRDEAQCKDIKLKNC
Ga0272435_100009419	F069514	GAG	MIEFIDNNALFSIIFSISFFLNKDFHSCMSFEFNVIKYESSHERLQMTKVENIFEHMNKTLKFARKSLVKT
Ga0272435_1000094194	F001253	N/A	VTFIKDAMKDVLIFSTMSSSNDFFASKSLTTECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFNDHYAKKLITHAIYSNLTVQDHMKRFISMLII
Ga0272435_1000094195	F037508	N/A	VIFRLEDDADQQIYAKHHVEAFSFYQSLSELLKHLKEIYEDQNLIQKCHHEYVALKQLNKLFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNALSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272435_100009420	F094626	N/A	MMKQVNKHRKEVDYEIKSKMFFNERNIITARFFKKLNDKMFNSFINLDFIDSSYKLKLSEFMHVHDVFYSDLLCFVIDDFLSDQKNESSDSIVINDENE
Ga0272435_10000946	F000597	N/A	MSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYSNSTVQDHMIDTASMLIIRLDQHQMILEKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000094

Overview

Ecosystem & Geography

Associated Families

Sequences